OpenMR Benelux 2020

Program

The program for OpenMR Benelux 2020 is shown below.

The event will span three days during which participants can take part in the following main activities:

  • Tuesday 21 January - Talks: the opening day of OpenMR Benelux will be filled with talks and discussions on a variety of topics applicable to open science in MRI, similar to OpenMR Benelux 2019.
  • Wednesday and Thursday 22+23 January - HackTrack: this year, we will also host a hackathon! Participants are welcome to suggest their own projects or join an existing project. Head over to our hackathon repository to browse projects or to suggest your own.
  • Wednesday and Thursday 22+23 January - TrainTrack: in parallel to the HackTrack, we have worked out a full program for those who want to get more hands-on experience with tools for conducting open research in MRI, including version control with git, Python, Jupyter Notebooks, Docker, and a treasure-trove of toolbox demos.

 

Time

Program: Tuesday, 21 January 2020

Talk Workshop Demo

Slides

8:15 – 9:00

Registration and Coffee

 

 

9:00 – 9:20

Introduction and Welcome

Stephan Heunis & Organizing Committee

 

 

9:20 – 9:45

Hackathon Project Pitches

 

 

9:45 – 10:15

Diving Into Metascience – Doing Research on Research

Marjan Bakker

Talk

 

10:15 – 10:30

Open Discussion

 

 

10:30 – 11:00

Coffee Break

 

 

11:00 – 11:30

Analytical Flexibility and Questionable Research Practices in MRI

Cassandra Gould van Praag

Talk

 

11:30 – 11:45

Open Discussion

 

 

11:45 – 12:15

How can Open Science Contribute to (Clinical) Research in Radiology?

Pim Pullens

Talk

 

12:15 – 12:30

Open Discussion

 

 

12:30 – 13:30

Lunch

 

 

13:30 – 14:00

Open Science in the Context of Companies, Intellectual Property, and Collaborative Research

Dirk Smeets

Talk

 

14:00 – 14:15

Open Discussion

 

 

14:15 – 14:45

The Open Source Imaging Initiative

João Periquito

Talk

 

14:45 – 15:00

Open Discussion

 

 

15:00 – 15:30

Coffee Break

 

 

15:30 – 16:00

Current and Future Scenarios for Open Scientific Publishing and Reviewing

Daniele Marinazzo

Interactive Talk

 

16:00 – 16:15

Open Discussion

 

 

16:15 – 16:45

The Turing Way: Reproducible, Inclusive, Collaborative Data Science

Kirstie Whitaker

Talk

 

16:45 – 17:00

Open Discussion

 

 

17:00 – ...

Drinks + Snacks and Further Discussion

 

 

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Time

Program: Wednesday, 22 January 2020

Program: Wednesday, 22 January 2020

Talk Workshop Demo

Slides

Hack Track

Train Track

 

9:00 – 10:45

Hackathon

Reproducibility Decoded: Case Studies from Data-Intensive Sciences

Fatma Deniz

Workshop

 

10:45 – 11:00

Break

Break

 

 

11:00 – 12:45

Hackathon

Software Version Control with git and GitHub

Remi Gau & Sofie Van Den Bossche

Workshop

 

12:45 – 13:30

Lunch

Lunch

 

 

13:30 – 15:15

Hackathon

The Basics of Python and Jupyter Notebooks for Medical Image Analysis

Serena Bonaretti

Workshop

 

15:15 – 15:35

Break

Break

 

 

15:35 – 17:20

Hackathon

Introduction to Docker and Binder

Lukas Snoek & Agah Karakuzu

Workshop

 

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Time

Program: Thursday, 23 January 2020

Program: Thursday, 23 January 2020

Talk Workshop Demo

Slides

Hack Track

Train Track

 

9:00 – 9:50

Hackathon

Fostering Open and Inclusive Communities

Malvika Sharan

Talk

 

9:50 – 10:40

Hackathon

Where to Go Next? The Landscape of Post-PhD Career Tracks

Natalia Bielczyk

Talk

 

10:40 – 11:00

Break

Break

 

 

11:00 – 11:50

Hackathon

Probing Brain Organization and Function with Neuroimaging Markers of Connectivity (HBP)

Sarah Genon

(last-minute replacement by Anna Plachti)

The HBP Human Brain Atlas

Lyuba Zehl

Workshop

 

 


Talk

 

11:50 – 12:40

Hackathon

MR Image Registration with Elastix and Simple Elastix

Stefan Klein

TBA

 

12:40 – 13:20

Lunch

Lunch

 

 

13:20 – 14:10

Hackathon

Converting Neuroimaging Data to BIDS

Marcel Zwiers & Robert Oostenveld

TBA

 

14:10 – 15:00

Hackathon

Web Technologies in Neuroimaging

Tim van Mourik

Workshop

 

15:00 – 15:20

Break

Break

 

 

15:20 – 16:10

Hackathon

Numerical Simulation of MR Physics

Tony Stöcker

Talk - Demo

 

16:10 – 17:00

Hackathon

Find, Use and Share Scientific Data with the EBRAINS Knowledge Graph (HBP)

Oliver Schmid


Sharing GDPR Compliant Neuroimaging Research Data

Stephan Heunis

Talk - Demo

 
 

 

Talk

 

17:00 – 18:00

Project Wrap-ups and Overall Wrap-up

 

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