The program for OpenMR Benelux 2020 is shown below.
The event will span three days during which participants can take part in the following main activities:
- Tuesday 21 January - Talks: the opening day of OpenMR Benelux will be filled with talks and discussions on a variety of topics applicable to open science in MRI, similar to OpenMR Benelux 2019.
- Wednesday and Thursday 22+23 January - HackTrack: this year, we will also host a hackathon! Participants are welcome to suggest their own projects or join an existing project. Head over to our hackathon repository to browse projects or to suggest your own.
- Wednesday and Thursday 22+23 January - TrainTrack: in parallel to the HackTrack, we have worked out a full program for those who want to get more hands-on experience with tools for conducting open research in MRI, including version control with git, Python, Jupyter Notebooks, Docker, and a treasure-trove of toolbox demos.
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Time |
Program: Tuesday, 21 January 2020 |
Talk Workshop Demo |
Slides |
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8:15 – 9:00 |
Registration and Coffee |
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9:00 – 9:20 |
Introduction and Welcome Stephan Heunis & Organizing Committee |
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9:20 – 9:45 |
Hackathon Project Pitches |
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9:45 – 10:15 |
Diving Into Metascience – Doing Research on Research Marjan Bakker |
Talk |
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10:15 – 10:30 |
Open Discussion |
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10:30 – 11:00 |
Coffee Break |
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11:00 – 11:30 |
Analytical Flexibility and Questionable Research Practices in MRI Cassandra Gould van Praag |
Talk |
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11:30 – 11:45 |
Open Discussion |
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11:45 – 12:15 |
How can Open Science Contribute to (Clinical) Research in Radiology? Pim Pullens |
Talk |
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12:15 – 12:30 |
Open Discussion |
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12:30 – 13:30 |
Lunch |
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13:30 – 14:00 |
Open Science in the Context of Companies, Intellectual Property, and Collaborative Research Dirk Smeets |
Talk |
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14:00 – 14:15 |
Open Discussion |
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14:15 – 14:45 |
The Open Source Imaging Initiative João Periquito |
Talk |
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14:45 – 15:00 |
Open Discussion |
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15:00 – 15:30 |
Coffee Break |
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15:30 – 16:00 |
Current and Future Scenarios for Open Scientific Publishing and Reviewing Daniele Marinazzo |
Interactive Talk |
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16:00 – 16:15 |
Open Discussion |
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16:15 – 16:45 |
The Turing Way: Reproducible, Inclusive, Collaborative Data Science Kirstie Whitaker |
Talk |
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16:45 – 17:00 |
Open Discussion |
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17:00 – ... |
Drinks + Snacks and Further Discussion |
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Time |
Program: Wednesday, 22 January 2020 |
Program: Wednesday, 22 January 2020 |
Talk Workshop Demo |
Slides |
|---|---|---|---|---|
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Hack Track |
Train Track |
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9:00 – 10:45 |
Hackathon |
Reproducibility Decoded: Case Studies from Data-Intensive Sciences Fatma Deniz |
Workshop |
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10:45 – 11:00 |
Break |
Break |
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11:00 – 12:45 |
Hackathon |
Software Version Control with git and GitHub |
Workshop |
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12:45 – 13:30 |
Lunch |
Lunch |
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13:30 – 15:15 |
Hackathon |
The Basics of Python and Jupyter Notebooks for Medical Image Analysis Serena Bonaretti |
Workshop |
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15:15 – 15:35 |
Break |
Break |
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15:35 – 17:20 |
Hackathon |
Introduction to Docker and Binder |
Workshop |
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Time |
Program: Thursday, 23 January 2020 |
Program: Thursday, 23 January 2020 |
Talk Workshop Demo |
Slides |
|---|---|---|---|---|
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Hack Track |
Train Track |
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9:00 – 9:50 |
Hackathon |
Fostering Open and Inclusive Communities Malvika Sharan |
Talk |
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9:50 – 10:40 |
Hackathon |
Where to Go Next? The Landscape of Post-PhD Career Tracks Natalia Bielczyk |
Talk |
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10:40 – 11:00 |
Break |
Break |
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11:00 – 11:50 |
Hackathon |
Probing Brain Organization and Function with Neuroimaging Markers of Connectivity (HBP) Sarah Genon (last-minute replacement by Anna Plachti)The HBP Human Brain Atlas Lyuba Zehl |
Workshop
Talk |
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11:50 – 12:40 |
Hackathon |
MR Image Registration with Elastix and Simple Elastix Stefan Klein |
TBA |
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12:40 – 13:20 |
Lunch |
Lunch |
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13:20 – 14:10 |
Hackathon |
Converting Neuroimaging Data to BIDS |
TBA |
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14:10 – 15:00 |
Hackathon |
Web Technologies in Neuroimaging Tim van Mourik |
Workshop |
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15:00 – 15:20 |
Break |
Break |
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15:20 – 16:10 |
Hackathon |
Numerical Simulation of MR Physics Tony Stöcker |
Talk - Demo |
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16:10 – 17:00 |
Hackathon |
Find, Use and Share Scientific Data with the EBRAINS Knowledge Graph (HBP) Oliver Schmid Sharing GDPR Compliant Neuroimaging Research Data Stephan Heunis |
Talk - Demo
Talk |
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17:00 – 18:00 |
Project Wrap-ups and Overall Wrap-up |
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