OpenMR Benelux 2020

Program

The preliminary program for OpenMR Benelux 2020 is shown below.

The event will span three days during which participants can take part in the following main activities:

  • Tuesday 21 January - Talks: the opening day of OpenMR Benelux will be filled with talks and discussions on a variety of topics applicable to open science in MRI, similar to OpenMR Benelux 2019.
  • Wednesday and Thursday 22+23 January - HackTrack: this year, we will also host a hackathon! Participants are welcome to suggest their own projects or join an existing project. Head over to our hackathon repository to browse projects or to suggest your own.
  • Wednesday and Thursday 22+23 January - TrainTrack: in parallel to the HackTrack, we have worked out a full program for those who want to get more hands-on experience with tools for conducting open research in MRI, including version control with git, Python, Jupyter Notebooks, Docker, and a treasure-trove of toolbox demos.

 

Time

Program: Tuesday, 21 January 2020

Talk Workshop Demo

Slides

8:15 – 9:00

Registration and Coffee

 

 

9:00 – 9:45

Introduction and Welcome

Stephan Heunis & Organizing Committee

 

 

9:45 – 10:15

Diving Into Metascience – Doing Research on Research

Marjan Bakker

Talk

 

10:15 – 10:30

Open Discussion

 

 

10:30 – 11:00

Coffee Break

 

 

11:00 – 11:30

Analytical Flexibility and Questionable Research Practices in MRI

Cassandra Gould van Praag

Talk

 

11:30 – 11:45

Open Discussion

 

 

11:45 – 12:15

How can Open Science Contribute to (Clinical) Research in Radiology?

Pim Pullens

Talk

 

12:15 – 12:30

Open Discussion

 

 

12:30 – 13:30

Lunch

 

 

13:30 – 14:00

Open Science in the Context of Companies, Intellectual Property, and Collaborative Research

TBA

Talk

 

14:00 – 14:15

Open Discussion

 

 

14:15 – 14:45

The Open Source Imaging Initiative

João Periquito

Talk

 

14:45 – 15:00

Open Discussion

 

 

15:00 – 15:30

Coffee Break

 

 

15:30 – 16:00

Current and Future Scenarios for Open Scientific Publishing and Reviewing

Daniele Marinazzo

Interactive Talk

 

16:00 – 16:15

Open Discussion

 

 

16:15 – 16:45

The Turing Way: Reproducible, Inclusive, Collaborative Data Science

Kirstie Whitaker

Talk

 

16:45 – 17:00

Open Discussion

 

 

17:00 – ...

Drinks and Further Discussion

 

 

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Time

Program: Wednesday, 22 January 2020

Program: Wednesday, 22 January 2020

Talk Workshop Demo

Slides

Hack Track

Train Track

 

9:00 – 9:30

Project Pitches

 

9:30 – 11:15

Hackathon

Reproducibility in Decoded: Case Studies from Data-Intensive Sciences

Fatma Deniz

Workshop

 

11:15 – 11:35

Break

Break

 

 

11:35 – 13:20

Hackathon

Software Version Control with git and GitHub

Remi Gau & Sofie Van Den Bossche

Workshop

 

13:20 – 14:10

Lunch

Lunch

 

 

14:10 – 15:55

Hackathon

The Basics of Python and Jupyter Notebooks for Medical Image Analysis

Serena Bonaretti

Workshop

 

15:55 – 16:15

Break

Break

 

 

16:15 – 18:00

Hackathon

Introduction to Docker and Binder

Lukas Snoek

Workshop

 

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Time

Program: Thursday, 23 January 2020

Program: Thursday, 23 January 2020

Talk Workshop Demo

Slides

Hack Track

Train Track

 

9:00 – 9:50

Hackathon

Fostering Open and Inclusive Communities

Malvika Sharan

Talk

 

9:50 – 10:40

Hackathon

Where to Go Next? The Landscape of Post-PhD Career Tracks

Natalia Bielczyk

Talk

 

10:40 – 11:00

Break

Break

 

 

11:00 – 11:50

Hackathon

Probing Brain Organization and Function with Neuroimaging Markers of Connectivity (HBP)

Sarah Genon


The HBP Human Brain Atlas

Lyuba Zehl

Workshop

 

 


Talk

 

11:50 – 12:40

Hackathon

MR Image Registration with Elastix and Simple Elastix

Stefan Klein

TBA

 

12:40 – 13:20

Lunch

Lunch

 

 

13:20 – 14:10

Hackathon

Converting Neuroimaging Data to BIDS

Marcel Zwiers & Robert Oostenveld

TBA

 

14:10 – 15:00

Hackathon

Open Source Neuroimaging Pipelines with GiraffeTools

Tim van Mourik

Workshop

 

15:00 – 15:20

Break

Break

 

 

15:20 – 16:10

Hackathon

Numerical Simulation of MR Physics

Tony Stöcker

Talk - Demo

 

16:10 – 17:00

Hackathon

Find, Use and Share Scientific Data with the EBRAINS Knowledge Graph (HBP)

Oliver Schmid


Sharing GDPR Compliant Neuroimaging Research Data

Stephan Heunis

Talk - Demo

 
 

 

Talk

 

17:00 – 18:00

Project Wrap-ups and Overall Wrap-up

 

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